riboraptor package
==================

Submodules
----------

riboraptor.cli module
---------------------

.. automodule:: riboraptor.cli
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.coherence module
---------------------------

.. automodule:: riboraptor.coherence
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.count module
-----------------------

.. automodule:: riboraptor.count
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.download module
--------------------------

.. automodule:: riboraptor.download
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.dtw module
---------------------

.. automodule:: riboraptor.dtw
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.fasta module
-----------------------

.. automodule:: riboraptor.fasta
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.genome module
------------------------

.. automodule:: riboraptor.genome
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.hdf\_parser module
-----------------------------

.. automodule:: riboraptor.hdf_parser
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.helpers module
-------------------------

.. automodule:: riboraptor.helpers
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.infer\_protocol module
---------------------------------

.. automodule:: riboraptor.infer_protocol
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.interval module
--------------------------

.. automodule:: riboraptor.interval
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.kmer module
----------------------

.. automodule:: riboraptor.kmer
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.normalization module
-------------------------------

.. automodule:: riboraptor.normalization
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.parallel module
--------------------------

.. automodule:: riboraptor.parallel
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.plotting module
--------------------------

.. automodule:: riboraptor.plotting
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.sequence module
--------------------------

.. automodule:: riboraptor.sequence
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.sradb module
-----------------------

.. automodule:: riboraptor.sradb
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.statistics module
----------------------------

.. automodule:: riboraptor.statistics
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.tracks module
------------------------

.. automodule:: riboraptor.tracks
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.utils module
-----------------------

.. automodule:: riboraptor.utils
    :members:
    :undoc-members:
    :show-inheritance:

riboraptor.wig module
---------------------

.. automodule:: riboraptor.wig
    :members:
    :undoc-members:
    :show-inheritance:


Module contents
---------------

.. automodule:: riboraptor
    :members:
    :undoc-members:
    :show-inheritance: