Last updated: 2021-12-17

Checks: 2 0

Knit directory: sct2_revision/

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R Markdown file: up-to-date

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Repository version: 0848de4

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Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/raw_data/
    Ignored:    data/rds_filtered/
    Ignored:    data/rds_raw/
    Ignored:    data/sampled_counts/
    Ignored:    output/snakemake_output/

Untracked files:
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Unstaged changes:
    Deleted:    analysis/04_PBMC68k.Rmd
    Modified:   code/02_run_seurat.R
    Modified:   code/03_run_vst2_downsample.R
    Modified:   code/04_run_vst_ncells.R
    Modified:   code/06_run_sct.R
    Modified:   data/datasets.csv
    Modified:   snakemake/Snakefile_downsampling.smk
    Modified:   snakemake/Snakefile_glm_seurat.smk
    Modified:   snakemake/Snakefile_metacell.smk

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 0848de4 Saket Choudhary 2021-12-17 workflowr::wflow_publish(“analysis/index.Rmd”)
html 0a2e80d Saket Choudhary 2021-12-17 Build site.
Rmd 8afc486 Saket Choudhary 2021-12-17 workflowr::wflow_publish("analysis/*")
html d736ec8 Saket Choudhary 2021-07-07 Build site.
html 400797a Saket Choudhary 2021-07-06 workflowr::wflow_git_commit(all = TRUE)
Rmd ccb0fb4 Saket Choudhary 2021-07-06 workflowr::wflow_git_commit(all = TRUE)
Rmd e0b7c2c Saket Choudhary 2021-07-06 Start workflowr project.

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