Workshop Materials
Select a session below to access the workshop materials. Each session includes interactive code examples, visualizations, and exercises.
Session 01
Single-Cell RNA-seq Analysis
Hands-on tutorial covering quality control, normalization, clustering, and cell type annotation.
Open workshop
Session 02A
Liver Spatial Transcriptomics
Analysis of spatial transcriptomics with human liver datasets and integration techniques.
Open workshop
Session 02B
PBMC Integration
Data integration techniques with Harmony, CCA, and FastMNN for batch correction.
Open workshop
Session 02C
Canonical Correlation Analysis
Mathematical foundations and applications of CCA in single-cell data integration.
Open workshop
Local Notebooks
A version of these notebooks that can be run locally on your machine is available at: Google Drive
Additional Materials
All slides and other workshop materials are available at: Google Drive
GitHub Repository
The complete source code and materials for this workshop are available at: github.com/saketkc/qscb2025