riboraptor library is a Python library for analysis of Ribo-seq data.
It assumes the reads have already been aligned to a reference and are available as BAM/SAM for input.
Current capabilities of riboraptor include:
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$ Usage: riboraptor [OPTIONS] COMMAND [ARGS]...
riboraptor: Tool for ribosome profiling analysis
Options:
--version Show the version and exit.
--help Show this message and exit.
Commands:
bam-to-bedgraph Convert bam to bedgraph
bedgraph-to-bigwig Convert bedgraph to bigwig
export-bed-fasta Export gene level fasta from specified bed
export-gene-coverages Export gene level coverage for all genes for given region
export-metagene-coverage Export metagene coverage for given region
export-read-length Calculate read length distribution
periodicity Calculate periodicity
plot-metagene Plot metagene profile
plot-read-length Plot read length distribution
uniq-bam Create a new bam with unique mapping reads only
uniq-mapping-count Count number of unique mapping reads
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