Syllabus
Video recordings for some of the lectures is available on this playlist
Week | Date | Topic | Slides | Assignment | Resources |
---|---|---|---|---|---|
01 | 07-31 (Wed) |
|
1 | All biology is computational biology | |
01 | 08-02 (Fri) |
|
2U;2A | Code for GC content | |
02 | 08-07 (Wed) |
|
3U;3A | ||
02 | 08-09 (Fri) |
|
4U;4A |
|
|
03 | 08-14 (Wed) |
|
5 | ||
03 | 08-16 (Fri) |
|
6A;6B |
|
Genomes 5 Ch 4 |
04 | 08-21 (Wed) |
|
7 | Bioinformatics Algorithms 2nd Ed Ch 7 | |
04 | 08-23 (Fri) |
|
8 |
|
HandsOn 02 |
05 | 08-28 (Wed) |
|
9 | ||
05 | 08-30 (Fri) |
|
10 |
|
|
06 | 09-04 (Wed) |
|
11 | ||
06 | 09-06 (Fri) |
|
12 |
|
|
07 | 09-11 (Wed) |
|
13 | ||
07 | 09-13 (Fri) |
|
14 | ||
08 | 09-18 (Wed) | Mid-semester Week (NO CLASS) | |||
08 | 09-20 (Fri) | Mid-semester Week(NO CLASS) | Exam on 21st September, Saturday 11 AM - 1 PM, Venue: LC 202, LT 203 | ||
09 | 09-25 (Wed) |
|
15 | ||
09 | 09-27 (Fri) |
|
16 |
|
|
10 | 10-02 (Wed) | No class (institute holiday) | |||
10 | 10-04 (Fri) |
|
17 |
|
Data |
11 | 10-09 (Wed) |
|
18 | ||
11 | 10-11 (Fri) |
|
19 |
|
Paper |
12 | 10-16 (Wed) |
|
|||
12 | 10-18 (Fri) |
|
|
||
13 | 10-23 (Wed) |
|
|||
13 | 10-25 (Fri) |
|
|||
14 | 10-30 (Wed) |
|
|||
14 | 11-01 (Fri) | Multi-omics for human diseases | |||
15 | 11-06 (Wed) | Review | |||
15 | 11-08 (Fri) | Review |
Suggested readings
- Molecular Biology for Computer Scientists by Lawerence Hunter
- Genomes by TA Brown
- Computational Genome Analysis by Richard C. Deonier , Michael S. Waterman , and Simon Tavaré
- Bioinformatics Algorithms by Phillip Compeau and Pavel A. Pevzner
- Modern Statistics for Modern Biology by Susan Holmes and Wolfgang Huber
- Data Analysis for the Life Sciences by Rafael A Irizarry and Michael I Love