Index

A

aggregate_motif_ic() (in module pyseqlogo.utils)

approximate_error() (in module pyseqlogo.format_utils) (in module pyseqlogo.utils)

C

calc_info_matrix() (in module pyseqlogo.format_utils) (in module pyseqlogo.utils) calc_pfm() (in module pyseqlogo.utils) calc_relative_information() (in module pyseqlogo.format_utils) (in module pyseqlogo.utils)

cbb_palette (in module pyseqlogo.colorschemes) cinema (in module pyseqlogo.colorschemes) count_to_pfm() (in module pyseqlogo.format_utils) create_motif_from_alignment() (in module pyseqlogo.format_utils)

D

despine() (in module pyseqlogo.utils) draw_logo() (in module pyseqlogo.pyseqlogo)

draw_path() (pyseqlogo.pyseqlogo.Scale method) draw_protein() (in module pyseqlogo.pyseqlogo)

E

exact_error() (in module pyseqlogo.format_utils) (in module pyseqlogo.utils)

F

format_matrix() (in module pyseqlogo.format_utils)

G

get_chromosomes (pyseqlogo.wigoperations.WigReader attribute)

L

lesk (in module pyseqlogo.colorschemes)

load_motif() (in module pyseqlogo.utils)

M

max_motif_ic() (in module pyseqlogo.utils)

P

pfm_to_tuple() (in module pyseqlogo.utils) process_data() (in module pyseqlogo.format_utils) pyseqlogo (module) pyseqlogo.cli (module) pyseqlogo.colorschemes (module)

pyseqlogo.expected_frequencies (module) pyseqlogo.format_utils (module) pyseqlogo.pyseqlogo (module) pyseqlogo.utils (module) pyseqlogo.wigoperations (module)

Q

query() (pyseqlogo.wigoperations.WigReader method)

R

read_alignment() (in module pyseqlogo.format_utils)

S

Scale (class in pyseqlogo.pyseqlogo)

setup_axis() (in module pyseqlogo.pyseqlogo)

W

WigReader (class in pyseqlogo.wigoperations)