Index

C

collapse_labels() (in module pywsi.segmentation.helpers)

collapse_small_area() (in module pywsi.segmentation.helpers)

D

downsample() (in module pywsi.segmentation.diff_gaussian)

F

fit() (pywsi.normalization.macenko.MacenkoNormalization method) (pywsi.normalization.reinhard.ReinhardNormalization method)

fractal_dimension() (in module pywsi.segmentation.fractal_dimension)

G

get_both_stains() (pywsi.normalization.macenko.MacenkoNormalization method) get_concentrations() (pywsi.normalization.macenko.MacenkoNormalization method) get_eosin_channel() (pywsi.normalization.macenko.MacenkoNormalization method) get_eosin_stain() (pywsi.normalization.macenko.MacenkoNormalization method)

get_hematoxylin_channel() (pywsi.normalization.macenko.MacenkoNormalization method) get_hematoxylin_stain() (pywsi.normalization.macenko.MacenkoNormalization method) get_mean_and_std() (pywsi.normalization.reinhard.ReinhardNormalization static method) get_stain_matrix() (pywsi.normalization.macenko.MacenkoNormalization method) gmm_thresholding() (in module pywsi.segmentation.binary_segmentation)

L

laplace_of_gaussian() (in module pywsi.segmentation.diff_gaussian)

M

MacenkoNormalization (class in pywsi.normalization.macenko)

max_clustering() (in module pywsi.segmentation)

P

perform_binary_cut() (in module pywsi.segmentation.graph_cut) poisson_deconvolve() (in module pywsi.segmentation.binary_segmentation) process_segmentation() (in module pywsi.cli) process_wsi() (in module pywsi.cli) pywsi (module) pywsi.cli (module) pywsi.io (module) pywsi.misc (module) pywsi.misc.xmltojson (module) pywsi.morphology (module)

pywsi.normalization (module) pywsi.normalization.macenko (module) pywsi.normalization.reinhard (module) pywsi.segmentation (module) pywsi.segmentation.binary_segmentation (module) pywsi.segmentation.diff_gaussian (module) pywsi.segmentation.fractal_dimension (module) pywsi.segmentation.graph_cut (module) pywsi.segmentation.helpers (module) pywsi.stats (module)

R

ReinhardNormalization (class in pywsi.normalization.reinhard)

T

transform() (pywsi.normalization.macenko.MacenkoNormalization method) (pywsi.normalization.reinhard.ReinhardNormalization method)

W

welford_simulatenous_update() (in module pywsi.stats)

welford_update_M1() (in module pywsi.stats) welford_update_M2() (in module pywsi.stats)

X

xmltojson() (in module pywsi.misc.xmltojson)