pysradb notebooks

These notebooks are ordered as a learning path through the main pysradb workflows. Download-oriented notebooks preview commands and selected rows instead of fetching large sequencing files during documentation builds.

1. Python API quickstart

2. Command-line download preview

3. Parallel download planning with the Python API

4. Converting SRA to FASTQ using Conda

5. Selecting subsets of a project

6. Metadata for multiple SRPs

7. Searching SRA, GEO, and ENA

8. Extracting identifiers from PMC and DOI records

9. Metadata enrichment with optional LLM backends

10. Parsing BioScience search results