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pysradb 3.0.0.dev0 documentation
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pysradb 3.0.0.dev0 documentation
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  • pysradb
    • pysradb package
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Notebooks demonstrating functionalities of pysradbΒΆ

  1. Python API

  2. Downloading datasets from SRA - command line

  3. Parallely download multiple datasets - Python API

  4. Converting SRA-to-fastq - command line (requires conda)

  5. Downloading subsets of a project - Python API

  6. Metadata for multiple SRPs

  7. Searching SRA/GEO/ENA

Copyright © 2023, Saket Choudhary
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